rs242327634 SNP Detail

Summary

• ID
  rs242327634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8732497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGTTCG GCTGGGGGCC
  GCGGGCGGCG GTGGGCCGGC GGCGGGCAGA AATGGGGGGC CGGCCCGGGA CACCAGCCCG
  GCGATAGCCA CCGCCCCGCC CAGCCCCACC CCGCGCGCCC GGATTGGCCT GGCCGTGTGC
  CAGGGCCGCG CCTGCAGCGC CGCCGGTGAG CCGCACGCGC CGCGGGCCGT GGGAAAGTGC
  Y
  GGCGCCCCGG CCGCCAGCCA ATCCGGACGG ACGGCGACGG CGGCGGCGAC GGTGGCGGCG
  GCGGCGGCGG CTGCTCTGGG CGGCTGCTCT GGGCGGCTGC ATGAATGGAG AAGAATAGCC
  AGGCGGGGGA GCCGGGCTGC ACGAGGGCGC GCCTGCCGGG CTCCTGGTGT GAACCTGTAA
  TCGGAGTCCG GGCGCCGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356905133	MGP_WTSI_3_8667437	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242327634					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905133	MGP_WTSI_3_8667437	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8732497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	399 bp upstream
Rr573306	regulatory region 573306	896 bp distal
Rr573307	regulatory region 573307	272 bp distal
Rr573308	regulatory region 573308	within coordinates
Tssr32550	transcription start site region 32550	1638 bp upstream
Tssr32551	transcription start site region 32551	594 bp upstream
Tssr32552	transcription start site region 32552	459 bp upstream
Tssr32553	transcription start site region 32553	425 bp upstream
Tssr32554	transcription start site region 32554	391 bp upstream
Tssr32555	transcription start site region 32555	381 bp upstream
Tssr32556	transcription start site region 32556	141 bp upstream