rs242316856 SNP Detail

Summary

• ID
  rs242316856
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90423068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACAGAGA GAAAGGACCA
  TTAGAACAGA GCCCCTACAT GGGATGTTAG CACATTCAGA GGACTCCAAA GGAAGACTGT
  CACAGATAGA GTGGTTGTCC CATGGAAGGA TCACTACAGA GCCATCCCTA AGACAGACAC
  TCCAAAAGGG CACTCAGATA GAGATGATTT CTGATGCGAA CCTCAACTGC AATACTGTTG
  K
  AACAGACAGT ATTGTCATTA CCCTTCCAGG CAGCCACTTC ACCCATTCTT GGATCCTTGA
  TTCCCCTGGT CTGTTTCTTT CCTGTCAGGT CAATCTGTGT GGACATCAGC TCCTGCTTTG
  GTATACTGAT GGCAGCAGAG ACTCTGACTG AACTGGAGGC GGCCATTGAG ACTGTGGTCT
  CTACTTTCTT CACCTTTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358833747	MGP_WTSI_3_90319683	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242316856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358833747	MGP_WTSI_3_90319683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90423068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13466	CpG island 13466	1417 bp distal
Rr375350	regulatory region 375350	1692 bp downstream
Rr580384	regulatory region 580384	1494 bp distal
Rr580385	regulatory region 580385	1779 bp distal
Rr580386	regulatory region 580386	1662 bp distal
Rr580387	regulatory region 580387	1383 bp distal
Rr580388	regulatory region 580388	1362 bp distal
Rr580389	regulatory region 580389	1316 bp distal
Rr580390	regulatory region 580390	132 bp distal
S100a1	S100 calcium binding protein A1	1431 bp upstream
S100a13	S100 calcium binding protein A13	Intron
Tssr30209	transcription start site region 30209	785 bp downstream
Tssr30210	transcription start site region 30210	763 bp downstream
Tssr34242	transcription start site region 34242	1427 bp upstream
Tssr34243	transcription start site region 34243	1395 bp upstream
Tssr34244	transcription start site region 34244	1382 bp upstream
Tssr34245	transcription start site region 34245	1341 bp upstream