rs242302414 SNP Detail

Summary

• ID
  rs242302414
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68951918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGATCT GCTAGGCTCA
  CCTACCGGCC CTTACGACCT CAATCCCGCC GGTAGCTCGG AGCGCCGCTG CTCCACCCGC
  GAGCGCGCGA AGCGAGGAGA GGCGAGCGCA CGCCCTCCGG AGCCCAGCCC GCCTCCCCAT
  CCTCAAGTCG GCGGCGAACG CACCGGGGCC GCGGGCGCTC GAGAAAGAGG GGCAGCGAGC
  M
  GCCTCCCCGG CGGAGCCGCG TACTCACCGC GAGGCGGGCG AGGCGGGCGA GGCGGGCGAG
  GCGGGCGAGG CGGGCGAGGC GGGCGACGGC GCGCACGGCG AGGGCTCCCG GGCAGCCTGG
  TGCGGACACT GCGAGGCGCT CGCCCGAGTC TTCAGGTGCC CGGCGGGGGC GGGGCCGGCG
  GCGCCGCAGC GACTTTCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358314001	MGP_WTSI_3_68848507	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242302414					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314001	MGP_WTSI_3_68848507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68951918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13256	CpG island 13256			within coordinates
Gm65005	predicted gene, 65005			265 bp upstream
Rr578118	regulatory region 578118			within coordinates
Rr578119	regulatory region 578119			160 bp proximal
Rr578120	regulatory region 578120			297 bp proximal
Rr578121	regulatory region 578121			548 bp proximal
Rr578122	regulatory region 578122			758 bp proximal
Rr578123	regulatory region 578123			1923 bp proximal
Trim59	tripartite motif-containing 59			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29529	transcription start site region 29529			491 bp upstream
Tssr29530	transcription start site region 29530			533 bp upstream
Tssr33523	transcription start site region 33523			65 bp downstream
Tssr33524	transcription start site region 33524			75 bp downstream
Tssr33525	transcription start site region 33525			112 bp downstream
Tssr33526	transcription start site region 33526			378 bp downstream
Tssr33527	transcription start site region 33527			400 bp downstream