rs242245872 SNP Detail

Summary

• ID
  rs242245872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTAGA TCCACCGCCT
  TTGACTGATC CAATCCGTTG CTGCCATCAT CTTACTTTAC CCACGTCCAA GTTGTTAAGT
  TAAATCCTGT ACTTAAAACA CTTTAAATAT TTTAGCTGTC TCTCTTTTTT TTTCTTTCAT
  ATATATTAGG TAGGGACTTA CAGTCTATCC CTGGCTAGCC TGAAACTTGC TATTTAGACC
  Y
  ACTGATCTCT AACCCACAGA CATCTGCCTG CCTGTGATTG CGAGGGCTGG GATTACAGGT
  GAGCAGCACC ACACACGCCT TCTTTTACAA CCTTTTGTAA CTCCAGTTCA AGGGCATTCA
  ATCAATGCCT TCCTGTGACC ACCAGAGCCA CTAGGCACAC ACATGGTACA CATTTATGTA
  TGCAGATACA CTCATACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277621	CHEV_4_116300912	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242245872					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485504 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	793 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	mRNA-UTR
Rr398403	regulatory region 398403	1307 bp downstream
Rr398404	regulatory region 398404	612 bp downstream
Rr398405	regulatory region 398405	143 bp downstream
Rr597936	regulatory region 597936	840 bp distal
Rr597937	regulatory region 597937	1520 bp distal
Rr597938	regulatory region 597938	within coordinates
Rr597939	regulatory region 597939	559 bp proximal
Tssr42894	transcription start site region 42894	910 bp upstream
Tssr42895	transcription start site region 42895	804 bp upstream
Tssr42896	transcription start site region 42896	399 bp upstream
Tssr42897	transcription start site region 42897	351 bp upstream
Tssr42898	transcription start site region 42898	319 bp upstream