rs242240082 SNP Detail

Summary

• ID
  rs242240082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68953729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATTCTC AAATTCAGTT
  CCCAGCATGA CTGTGGACCC CTCACAACTG CCTGTAACTC CCGCTCCAGG GGATCTAAGC
  TCACTCTTGA CTGGCTCTGC AGACACACAC AGATGGCATA TACTTACACT GACAATCACT
  CGTACACATA AAAAATAAAA ATAAAAACAG TAGAAGCTTG TATACTGTCT TAGATAAGAA
  S
  AATAAACTCT TGAGGAATTA CAGAGCGAAC ATATATTTGT ATTAGAAGGC AAGTTCTAGG
  GCTGTTACTA AAAGATACTA AAAAGATGGG GACAGACAGA AGCTAGTAGA AGCTAAGGAT
  TACTTCAAGG AGCTTGTTAG GAAACGTTCA TTGTAGCCCC ATCTAAGTCT CTGGCCAGCA
  AGGATACTTT CTGGTTTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358314035	MGP_WTSI_3_68850318	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242240082					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314035	MGP_WTSI_3_68850318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68953729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	872 bp distal
Gm65005	predicted gene, 65005	29 bp downstream
Rr578118	regulatory region 578118	1652 bp distal
Rr578119	regulatory region 578119	1264 bp distal
Rr578120	regulatory region 578120	1493 bp distal
Rr578121	regulatory region 578121	143 bp distal
Rr578122	regulatory region 578122	1032 bp distal
Rr578123	regulatory region 578123	112 bp proximal
Trim59	tripartite motif-containing 59	1654 bp upstream
Tssr29529	transcription start site region 29529	1309 bp downstream
Tssr29530	transcription start site region 29530	1260 bp downstream
Tssr33523	transcription start site region 33523	1737 bp upstream
Tssr33524	transcription start site region 33524	1729 bp upstream
Tssr33525	transcription start site region 33525	1633 bp upstream
Tssr33526	transcription start site region 33526	1422 bp upstream
Tssr33527	transcription start site region 33527	1397 bp upstream