rs242209223 SNP Detail

Summary

• ID
  rs242209223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8949750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCAAAT GGGTAAACTG
  AGCCCCGCTT TCCTATATGC AAATTGCACC CCCCTCCCCA CCCCCATTTC ACGGGTACCT
  AATCCGGGTC AGTTCTACCT ACCCTTGCCC TGCCCGCACC CCCCTCTCTC AGTCTCTTGC
  TCGCTTGCTT TTGCTATCTC TCTCTGCTGC TGTGTACGTG TGTGAACCCT GCCAGGGCTG
  S
  CGAAGAACCA GCCGCCGCCT TTAGTCCCAG CCTCCCGCCT TCAAACACTA GGGCAGGTCT
  GGCTGCCAGA GACAGTTGGC CTCCTAACCA GCCTGTGAGC TGCTCTCTCT GTGCCTAACC
  CCTTCTGGCC TCCGCCGTTC GGGCGCTGGC TTCCGAGACG CGCCGGGCTC TGGGAACCCC
  CTGCCACCGC TCAAGCCCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367333513	MGP_WTSI_6_8899750	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242209223					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367333513	MGP_WTSI_6_8899750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8949750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17155	CpG island 17155			331 bp distal
Cpgi17156	CpG island 17156			within coordinates
Cpgi17157	CpG island 17157			1304 bp proximal
Nxph1	neurexophilin 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr626455	regulatory region 626455			1126 bp distal
Rr626456	regulatory region 626456			1100 bp distal
Rr626457	regulatory region 626457			64 bp distal
Rr626458	regulatory region 626458			1825 bp proximal
Tssr54925	transcription start site region 54925			1312 bp downstream
Tssr54926	transcription start site region 54926			1148 bp downstream
Tssr54927	transcription start site region 54927			1131 bp downstream
Tssr54928	transcription start site region 54928			821 bp downstream
Tssr54929	transcription start site region 54929			787 bp downstream
Tssr54930	transcription start site region 54930			682 bp downstream
Tssr54931	transcription start site region 54931			64 bp downstream
Tssr54932	transcription start site region 54932			62 bp upstream