rs242205542 SNP Detail

Summary

• ID
  rs242205542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149391559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCGGTTGG AACCCTGATG CCAACCACAA TAGGGGGTGA
  GAGAGCAGAT GAGGGGGGAG AGATCGGCTG GCTCCTCAGA GCTGCAATGT GCGCACATAC
  R
  GCGGGACAGC GACCGATCTG CTGGCCCGCG GACAGAGCGG GGCCTGGCAG CCCAGGGGAA
  GCGGAGGGCT GGTGCAGGGC ACTGCAGGGG ACCGGCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321425363	CHEV_4_148681211	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242205542					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149391559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	within coordinates
Kif1b	kinesin family member 1B	Intron
Rr398866	regulatory region 398866	573 bp upstream
Rr604876	regulatory region 604876	within coordinates
Rr604877	regulatory region 604877	207 bp proximal
Rr604878	regulatory region 604878	394 bp proximal
Rr604879	regulatory region 604879	806 bp proximal
Tssr44642	transcription start site region 44642	583 bp downstream
Tssr44643	transcription start site region 44643	612 bp downstream