rs242172238 SNP Detail

Summary

• ID
  rs242172238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86962005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGTAC CCCCAGAGCT
  TTCAGGGACT AAACCGCCAA CCAAAGAGAA CACGTGGAGG GACCTATGGC TTCCAGCTGC
  ATATGTAGCA GAGGATGGCC TTGTTGGACA TCAGTGGTGC CAGGACAGGG AAGCCGGAGT
  GGGTGGGTTG GTGAGCAAGG GGAGAGGGGA TGGGATAGGG GGTTTTCGGA GGGGAAATGA
  R
  GAAAGGGGAT AACATTTGAA ATGTAAATAA AGAAAATATC TAATAAAAAA GAATTACGAC
  AAACAAACAA AAAAAAACAT TCCTCAAAAA TTGAACTTGT GAACATTTTA ATATTATTTT
  GCCTTTGAGT CATAATTGAT TACTGGGCTT TTCTCTCTGA CCACCATTTT CACTTCTTAG
  TTTGGCTTCA TCTGGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321848013	CHEV_6_86935017	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242172238					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86962005 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	Intron
Rr633566	regulatory region 633566	482 bp proximal