rs242150244 SNP Detail

Summary

• ID
  rs242150244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119819084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCAAAG CATTAGGAAG
  GCTGTGAACC ACTGCTCTAA ATAGTTTTGG GATCAAAGAA GTTCTCATGG GATGATACTG
  GCAGATAACC AGTTAAAGAC CCTCTCCCCA GGAGTCTAAT CTCCTCTCCT CTCTTCTCCC
  CTTTTGTCTT TCCCCCTCCT TTGCTTTCCC TCTCCCCCCT CCTACAGACA GACAGACACA
  Y
  ACACACACAC ACATACACAC ACACACCACC TTGTTTCCAT GTCCAGGTTA ACAGATCTCT
  GCTCAGGGGT CCTTCTGTAT CCCCCAGGCA CAGAAACAGG CACTCAACTA GGGGCCTGAA
  AAATGGCTGT GGATGCCAGA GAGGTCACCT AGTCAAACAC TTCCAAGAAA CCTGGAAGCT
  GGAAGTAGCG GCTCTCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss363029141	MGP_WTSI_4_119634492	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs242150244					SNP	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363029141	MGP_WTSI_4_119634492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119819084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598692	regulatory region 598692			1877 bp distal
Rr598693	regulatory region 598693			244 bp proximal
Rr598694	regulatory region 598694			361 bp proximal
Tssr43140	transcription start site region 43140			646 bp downstream