rs242086376 SNP Detail

Summary

• ID
  rs242086376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTTGAA ATTACACATC
  TATTCTCTTT AGCCTTCCTC TTGCGATGAT GGACAGTAAC CAAAAGCAGT GTGGGGAGAA
  AAGAGTCCAT TTGACTTCCA TTTTCAGGTA ACGGGTTGTC ACTGACAGAA GTCAGGGTGG
  GAACTCAAGA AGAAGCAGTC AGGACCTTAG AGAAAGCAGT TTTTTTACTG GCTTTCTCCT
  Y
  GGCTTCTCTA AGCTTGCTTT CTTGTACAGC CCAGACCACT TATCCAGGCA GGTGTAGCTA
  CTCCCACAGT GGGATGTACC CTTTAATATT AATTAGAAAT CTAGAAAATG CCCTTTAGAC
  AAACCCATAG GCCAATCCGA TCCAGGTAAC CTCAGCTAAG GTTCCCTCTT CCGGGACGAG
  TTTGAGTCAC GTTGACAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771954	CHEV_3_54374229	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242086376					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477728 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	414 bp upstream
Rr576808	regulatory region 576808	1913 bp distal
Rr576809	regulatory region 576809	374 bp proximal
Tssr29130	transcription start site region 29130	390 bp downstream