rs242024927 SNP Detail

Summary

• ID
  rs242024927
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100521747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TCTTTCCCTC ACACAAGAGT
  T
  CCCCTCTCTC TCGCCCTTTC TCTCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324797023	CHEV_14_100683530	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242024927					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100521747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41231	predicted gene, 41231			1163 bp upstream
Klf12	Kruppel-like transcription factor 12			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr496738	regulatory region 496738			within coordinates
Rr496739	regulatory region 496739			358 bp proximal
Tssr126898	transcription start site region 126898			866 bp upstream
Tssr130012	transcription start site region 130012			89 bp upstream
Tssr130013	transcription start site region 130013			142 bp downstream
Tssr130014	transcription start site region 130014			354 bp downstream
Tssr130015	transcription start site region 130015			382 bp downstream
Tssr130016	transcription start site region 130016			506 bp downstream
Tssr130017	transcription start site region 130017			545 bp downstream
Tssr130018	transcription start site region 130018			608 bp downstream
Tssr130019	transcription start site region 130019			636 bp downstream