rs242019164 SNP Detail

Summary

• ID
  rs242019164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104724934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCAGCC ATAGGGAAAA
  GGGGCCTCTA GGAGGCTGTC CCTGGCCCCG AGTCTCCATG GAGAAGCCAC AGGTGCTAAG
  GGAGGTTTGA TTGCCTACGC AGTTTGTGTT CTTTTCTCCC TAAAGCTCCC CGAGATTCTC
  CCGCCTACCC TGGGCCTCTT CAGCTCTCCC GCAGCGTGGA CCCTGCAGGC AGTCCTCCCT
  Y
  AACAAGGGGG CGGGGATCCC CGCTTGGCCC GCGCCTGCAG CGCCTTCCCT GTGGGACTCC
  CCTCCCCCAC CATCGAGCCC CGACCACCGC GAGCCGCGCG TGGGCACCGA CCCCTCCCCG
  CCGGGCTGGG CTGTGCAGAG CGGGCGGGCT ACGGGTGGCG CTGGCTGGGC GTGGGCAGAC
  GACGGAGTAG GTCTGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359096847	MGP_WTSI_3_104620536	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242019164					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359096847	MGP_WTSI_3_104620536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104724934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13652	CpG island 13652			within coordinates
Mov10	Mov10 RISC complex RNA helicase			Intron
				Noncoding-Transcript-Variant
Rr375522	regulatory region 375522			1106 bp downstream
Rr582621	regulatory region 582621			1229 bp distal
Rr582622	regulatory region 582622			within coordinates
Rr582623	regulatory region 582623			614 bp proximal
Tssr34894	transcription start site region 34894			464 bp downstream
Tssr34895	transcription start site region 34895			488 bp downstream
Tssr34896	transcription start site region 34896			560 bp downstream
Tssr34897	transcription start site region 34897			606 bp downstream
Tssr34898	transcription start site region 34898			648 bp downstream
Tssr34899	transcription start site region 34899			704 bp downstream
Tssr34900	transcription start site region 34900			862 bp downstream
Tssr34901	transcription start site region 34901			921 bp downstream