rs242009584 SNP Detail

Summary

• ID
  rs242009584
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152632821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGGTAG AGGAATCTCC
  TTCATACTTC CTATCTAAAA ATCCTCTGCA AAGAAAGACA CATGGAGAGC AGGGTGGGGT
  TTAGTGGATG GTTTTTTTTT TCCTACTTCT TTAGAGACCA AATACTGGAT TGAATCTGGG
  GAAAGCTGTG CACTTTGGAG TGGCCAGGGA CCTGGATATG TTGTGTGGTG ATTGATGGTT
  C
  TCGGGGGAGG TCTTGAACTT TAAGGCGGTG CTATTCCCTC CTCAGGTCTC AGCTTCCTTC
  TAACGCTTCT GCTTCCATAA TAATGCTTCC TGGCTCTGAC GTCTTAAAGG GTTAGTGCAG
  AAGAAACCAT TTTGGCTATT TTAGCAGAGA GTTCAGTGTT TGACGAGTCA GGTGATTTCT
  GGTCTTTGCT TTAGTGACAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029234	CHEV_3_152590148	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242009584					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152632821 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1710 bp upstream
Rr587626	regulatory region 587626	638 bp distal
Rr587627	regulatory region 587627	1266 bp proximal
Rr587628	regulatory region 587628	1721 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1705 bp upstream