rs241995699 SNP Detail

Summary

• ID
  rs241995699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118456580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGGAT CGCGTGCTCG
  CTCGCCCGCC CGCCCGCCGC AATCGGAGAA CCCCTCAAAT CGGGGGATGC CGCGGGGCTC
  GGTGTCCCCC GCAAGACGAA GGACAAAAGT TCCTCAGCTG ACAGGCGAGG GCTCTGCCCA
  TGCGCCTAAC GGCCCTCCTT TCTGGACTAC GCTTTCCAGA AGCCTCCGCG ATGACTCCGT
  K
  TGTGATCACG TTATGAAGTT TGGCTCTGAG TACCTCACTG TTGAGCGCTG CGCTGCTTCC
  CTAAGGCCTG ATCTTTAAGG GGATGATTGA ACAAGCAATG GGCACCCTGC GGAGTTAGAC
  AGAAGGCCGT CAGAGGGTGC GCAGTGTGTA CGGTGGGGTA GCTTAAATAC TTGAAGTTTA
  CATCCAAGGA GCTTGCAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924627	CHEV_6_118429637	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241995699					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118456580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	1298 bp distal
Rr637484	regulatory region 637484	310 bp distal
Rr637485	regulatory region 637485	within coordinates
Rr637486	regulatory region 637486	890 bp proximal
Rr637487	regulatory region 637487	1051 bp proximal
Tssr62662	transcription start site region 62662	301 bp upstream
Zfp9	zinc finger protein 9	mRNA-UTR