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rs241995699 SNP Detail
Summary
  • ID
    rs241995699
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr6:118456580 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCACAGGAT CGCGTGCTCG
    CTCGCCCGCC CGCCCGCCGC AATCGGAGAA CCCCTCAAAT CGGGGGATGC CGCGGGGCTC
    GGTGTCCCCC GCAAGACGAA GGACAAAAGT TCCTCAGCTG ACAGGCGAGG GCTCTGCCCA
    TGCGCCTAAC GGCCCTCCTT TCTGGACTAC GCTTTCCAGA AGCCTCCGCG ATGACTCCGT
    K
    TGTGATCACG TTATGAAGTT TGGCTCTGAG TACCTCACTG TTGAGCGCTG CGCTGCTTCC
    CTAAGGCCTG ATCTTTAAGG GGATGATTGA ACAAGCAATG GGCACCCTGC GGAGTTAGAC
    AGAAGGCCGT CAGAGGGTGC GCAGTGTGTA CGGTGGGGTA GCTTAAATAC TTGAAGTTTA
    CATCCAAGGA GCTTGCAATT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321924627 CHEV_6_118429637 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs241995699 SNP T G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:118456580 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17903 CpG island 17903 within coordinates
Rr637483 regulatory region 637483 1298 bp distal
Rr637484 regulatory region 637484 310 bp distal
Rr637485 regulatory region 637485 within coordinates
Rr637486 regulatory region 637486 890 bp proximal
Rr637487 regulatory region 637487 1051 bp proximal
Tssr62662 transcription start site region 62662 301 bp upstream
Zfp9 zinc finger protein 9 mRNA-UTR

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory