rs241957404 SNP Detail

Summary

• ID
  rs241957404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5496887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCCAAG AATCTCACCG
  CGGAGCGTGC ATTGGTGTTC GCTCAGAGCG GGACTTTTAC AGTAGCCAAT CATCTGCTTA
  CTAAAGTATG GGCTTCTTTG CCATTGGACC TCGAAAGCAA GGACCACCCT ACAGTTTTAT
  CCACTTTCTT CTTAGCGAAC AGCTCAAGTT TAGAAACTGC CTAAATAGGC TTATTATTAA
  K
  GTGGTGGAAA ATCCCAGTTC ACTTCTCTCC TGTAACACTT TCTACCTGTT AATTAAATGC
  AAACTAAAGA GCGATTTGCT GAGGGTTTGG CTGGCCCTGT AGTCCCCCTT CCCTGTCATT
  CCCCTCTTTC TCTAAGGCCT TCTAGTTTGC TCTTGACCGC CCTCCACTCC CCAGTCTGCT
  CCAAAAGCTC TTTCTTCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729290	CHEV_6_5446887	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241957404					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5496887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	247 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	609 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	88 bp distal
Rr626153	regulatory region 626153	1829 bp proximal
Tssr59753	transcription start site region 59753	1035 bp upstream
Tssr59754	transcription start site region 59754	1006 bp upstream
Tssr59755	transcription start site region 59755	955 bp upstream
Tssr59756	transcription start site region 59756	597 bp upstream
Tssr59757	transcription start site region 59757	571 bp upstream