rs241952780 SNP Detail

Summary

• ID
  rs241952780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31658030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCTGGT CCCCGTTTGC
  CTACACACCG GAACCTAAAC GCTTAACTTT CTGATTTGGA GAATCAGGGA AGGAAAGGGC
  ACTAGAATTT ATCAAAACGA GGGATCCTGT ACCGTATCTG AGACCCATCT AAGAATGTTA
  AAAAAGAAAA AAGAAAAAGA AAGAAAGAAA AAAATATGTC TGATATATTC TTGTACACTT
  Y
  ATCAGGGAGA GGCCCAGCTT GAGTGCTTGG AGTGGTTTCA TTGTGCATCT TGGATTAGAC
  CAAAGTAAAT TCCAAGGCAG CAGACATCGT TTGCACAGAG GAAACCAGAA CCCACTGCAG
  GTGAGCACAT CTGTTGTCAG GGCGTTAGAG TCTCTGACAC CAAAGAAACA TTAGTTTGCC
  CATTTGCACA GTAGGGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357445747	MGP_WTSI_3_31502803	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241952780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357445747	MGP_WTSI_3_31502803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31658030 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	329 bp distal
Rr574918	regulatory region 574918	442 bp distal
Rr574919	regulatory region 574919	316 bp distal