rs241937079 SNP Detail

Summary

• ID
  rs241937079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172389357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCTG GGCGGCTCCA
  GTCTCGTCCC AATGAGAGGG ACCGACCTGC GTTGCCAGAG TGTGAGTGAC TGCAGGCTCC
  CTAGGGGGCG GCAGAGCTGA GCCCCTGGCA GCCTTCCTTC CACTCCCATA TCTCTGCACG
  GGGACCTTAG AGCAAGTTCT TAGTCCCGGG GACGGGGGGA ATGGGAGGTG GGCAGGACAC
  Y
  TTACCCAGCC CTGGCTGCCA AGGGGTACAA CCACACGGGT CAACGTCTTT CCGTGGGCGA
  TGGTAGGAGA TTGTTTGGAG CGCGGGAACC ATCAGAGAAG CTGAGCTCTC AAGGAAGGCG
  GAAGCTTCCT GCACCTGGAC TCTGTGTCCA GGTCCCGGCC CCCAAGCTGG GTGTGGATGG
  GACAGGGTCC TCCAGAGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356643167	MGP_WTSI_2_172372937	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241937079					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356643167	MGP_WTSI_2_172372937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172389357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12822	CpG island 12822	1322 bp distal
Cpgi12823	CpG island 12823	within coordinates
Cpgi12824	CpG island 12824	1250 bp proximal
Cpgi12825	CpG island 12825	1822 bp proximal
Rr571697	regulatory region 571697	1666 bp proximal
Tssr21961	transcription start site region 21961	1752 bp downstream
Tssr21962	transcription start site region 21962	1709 bp downstream
Tssr21963	transcription start site region 21963	1238 bp downstream
Tssr21964	transcription start site region 21964	1213 bp downstream
Tssr21965	transcription start site region 21965	1205 bp downstream