rs241934224 SNP Detail

Summary

• ID
  rs241934224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTGGCT GGCGGGGGGG
  GGGGGGGGGG GGCAGGATCA GGGGAGATAG GGGAACAGCT ATCTTGTTAA TGTGCTATGC
  CTCATCTTTG CGGAGGTGGG AGAGAGGATG TGGGAGTTGG GGATCTTGTT ATAGAACCCT
  GAGCTGTCCT TGAACCTCTG GGATGGGAGG AACTCCTATC TGTCTGCATT GTGGATAGTC
  R
  AGGACACTCC TAAGCAGGGA GACTGGAGAG GTATTTGCAA GTGGTCCCCT GGGACCTAAA
  ACCTCAAGAG GAGCCTATTG TCTCTGCCCA CAGGAACATC TGTGTCTTTT CTCTTCTTAT
  TTTGTCCTTG AGTTCTTTTT TCTGCACTCA AATGGGGTGG GGTGGGGATC TCAAGCGCTC
  GGGGAGTGGG GGGGGGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934143	MGP_WTSI_10_75400717	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241934224					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934143	MGP_WTSI_10_75400717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773806 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			225 bp downstream
Cpgi1737	CpG island 1737			1532 bp distal
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr401998	regulatory region 401998			1927 bp downstream
Rr434185	regulatory region 434185			within coordinates
Tssr94151	transcription start site region 94151			1713 bp downstream
Tssr94152	transcription start site region 94152			1680 bp downstream
Tssr94153	transcription start site region 94153			1650 bp downstream
Tssr94154	transcription start site region 94154			1639 bp downstream
Tssr94155	transcription start site region 94155			1555 bp downstream
Tssr94156	transcription start site region 94156			798 bp downstream
Tssr94157	transcription start site region 94157			777 bp downstream
Tssr94158	transcription start site region 94158			639 bp downstream
Tssr98154	transcription start site region 98154			416 bp downstream
Tssr98155	transcription start site region 98155			1992 bp downstream