rs241897335 SNP Detail

Summary

• ID
  rs241897335
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAAC ACTTGGTCTC
  TTAAAACCTC AAAGCCACCC CCAGTGACTC ACCTTCCACA ACAAAGCCAC ACCTCCTAAT
  CCTTTCCAAA CCGTTCCACC AATGGGGACC AAGTATGCAA ATATCTGAGA GCCTATTGGG
  GCATTGTCAC TCACACCACC ACAGGAGCTC ATTGGCATAA TGCTTTTTTT TGGGGGGGGG
  S
  GGGGCGGTTC AAGACAGGGT TTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA
  CCAGGCTGGC CTCGAACTTA GAAATCTGCC TGCCTCCTTC CCCCCCCCCC GCGCCCCCCC
  CCCCGAGTGC TGGGATTAAA GGTGTGCGCC ACTACCACCT GGTTGGCATA ATACTTTGAT
  TAGTTGTCTG CTCAGAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320903129	CHEV_3_121071829	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241897335					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	1550 bp proximal
Gm33363	predicted gene, 33363	126 bp upstream
Rr397973	regulatory region 397973	558 bp upstream
Rr397974	regulatory region 397974	1278 bp upstream
Rr584057	regulatory region 584057	250 bp proximal
Rr584058	regulatory region 584058	709 bp proximal
Rr584059	regulatory region 584059	1297 bp proximal
Tssr31438	transcription start site region 31438	671 bp upstream
Tssr31439	transcription start site region 31439	736 bp upstream