rs241895635 SNP Detail

Summary

• ID
  rs241895635
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102969791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatcccaag aggttggagg cagaggcagg
  aagatctctg tgaattagag ccagcctggt ttacagagag ttccagaaac cctgtcttga
  aaaaCTAAGG AAAAAAAAAA ACCTGGAGAA TATAATATAC TCATGGGGAT AAACTCGAAG
  T
  GTAATAGCGT TCCTGGCCTA tgtgtgtgta tatgtgcgtg tgtgtgcgtg CTGCGGGATG
  TTACATCATA CTCAAGGGGC ATAATCCAAA GCCAGATCCC GTGGGGACTT GGAAGAAAGG
  GAGCTCAGAG GGAAAGGGAA AAGCTTAAGG                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321235889	CHEV_4_102785199	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241895635					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102969791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			1303 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1796 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			1311 bp proximal
Rr596357	regulatory region 596357			1812 bp proximal
Rr596358	regulatory region 596358			1951 bp proximal
Tssr38082	transcription start site region 38082			1791 bp upstream
Tssr38083	transcription start site region 38083			1808 bp upstream
Tssr38084	transcription start site region 38084			1868 bp upstream
Tssr42583	transcription start site region 42583			1616 bp downstream
Tssr42584	transcription start site region 42584			1628 bp downstream
Tssr42585	transcription start site region 42585			1644 bp downstream
Tssr42586	transcription start site region 42586			1711 bp downstream
Tssr42587	transcription start site region 42587			1722 bp downstream
Tssr42588	transcription start site region 42588			1763 bp downstream
Tssr42589	transcription start site region 42589			1968 bp downstream