rs241878809 SNP Detail

Summary

• ID
  rs241878809
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA GCTGGAGCTT GGGGAGGTCC
  G
  GGCAAGAGCA GAGCCCGCTG CCCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438750	CHEV_2_102390255	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241878809					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr561703	regulatory region 561703			76 bp distal
Rr561704	regulatory region 561704			805 bp proximal
Tssr19094	transcription start site region 19094			18 bp downstream
Tssr19095	transcription start site region 19095			1 bp upstream
Tssr19096	transcription start site region 19096			19 bp upstream
Tssr19097	transcription start site region 19097			40 bp upstream