rs241877115 SNP Detail

Summary

• ID
  rs241877115
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTCTGG AGGGGCCGTC
  TTGTATTGGA GTAGCGGGGC TGTTCCGTGG GAACCAGGCT AGGGGTGAGG AAGGCTGCTT
  TTGGCAGAAG CTCTGGGTCC TCAAGGATTG CCCAGTCATC TTTTCTGGCA CCAAAGACCC
  CACCCCTTCT GCCCTCCGGC TCCCTGCTGG GCCTGTAGGG GGCTGCTTGC TGAGTCAGAC
  M
  TGCCTGCCTT GACTCTTATC CCTTCCTCAC TAACTATGCT CAGCTCGGAG TGTTCACTCT
  TTAGGGGAGG AGGTGAGGGA ACAGAGGTGG CCAGTCTTCC CTCCTACTCC CAAGTCCTCA
  CTCTCAGTCG GTGCCTGGCT TCAACATCAT CCACAGGGCC CCAGAATAGG CTACCGTTTT
  CTTCCTGCTC CCAGGAAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417743	CHEV_4_147535384	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241877115					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			231 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1069 bp upstream
Rr398857	regulatory region 398857			946 bp downstream
Rr604608	regulatory region 604608			644 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1079 bp downstream
Tssr40264	transcription start site region 40264			645 bp downstream
Tssr40265	transcription start site region 40265			623 bp downstream
Tssr40266	transcription start site region 40266			595 bp downstream
Tssr44596	transcription start site region 44596			1673 bp upstream
Tssr44597	transcription start site region 44597			1456 bp upstream
Tssr44598	transcription start site region 44598			1438 bp upstream
Tssr44599	transcription start site region 44599			1345 bp upstream
Tssr44600	transcription start site region 44600			1203 bp upstream