rs241807783 SNP Detail

Summary

• ID
  rs241807783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75772487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGACTCA AGAAACGGAG
  GCAGGATTCA CACATGGTTG CATAAGGAGC TGCTTAAGAG TCCAATGAGG AGTGGCCCAA
  TGTATTCAGA GTTGCCTCAG ACCCAGGATT TTGAGGGTCC TAACCCTCAT GGTCGTTAAA
  TCTACTGTCA CTCGCTGGAA AGCTCGCCCA GCCCTCATTT GAAGGCAAAA TATCTGACTG
  Y
  CGGAGACTGA CATGCACTAG ATCTATTTTT TTAAAGATAT ATTTATTTAT TTATTATATG
  TAATTTAACT GTAGCTGTCT TCAGACACCC TAGAAGAGGG CATCAGATCT CATTACAGAC
  GGTTGTGAGA CACCATGTGG TTGCTGGGAT TTGAACTCAG GACCTTCAGA GCAGTCGGTG
  CTCTTAACCA CTGAGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934126	MGP_WTSI_10_75399398	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241807783					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934126	MGP_WTSI_10_75399398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75772487 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Cpgi1737	CpG island 1737	213 bp distal
Gm867	predicted gene 867	1070 bp downstream
Rr384937	regulatory region 384937	617 bp upstream
Rr401998	regulatory region 401998	608 bp downstream
Rr434184	regulatory region 434184	1070 bp distal
Rr434185	regulatory region 434185	190 bp proximal
Tssr94149	transcription start site region 94149	781 bp downstream
Tssr94150	transcription start site region 94150	745 bp downstream
Tssr94151	transcription start site region 94151	394 bp downstream
Tssr94152	transcription start site region 94152	361 bp downstream
Tssr94153	transcription start site region 94153	331 bp downstream
Tssr94154	transcription start site region 94154	320 bp downstream
Tssr94155	transcription start site region 94155	236 bp downstream
Tssr94156	transcription start site region 94156	509 bp upstream
Tssr94157	transcription start site region 94157	523 bp upstream
Tssr94158	transcription start site region 94158	644 bp upstream
Tssr98154	transcription start site region 98154	1735 bp downstream