rs241791482 SNP Detail

Summary

• ID
  rs241791482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACCTC ACGTGTCTGA
  AAACGGCGCA GCAGCCAGTT TACAAATCAT TTTGCTCCGC TGTTAGAAGG CGGCAGCTTT
  TAAGGCTGAG CCGAGATGTT TGAAAGGTGG AACACCCTTG GCCATGAAAT ATGTTCTCCT
  TACGTGCCTC AGCCTTTCAA AGTTCTGTGC ATTAGAGTCA GGAATTCCAT TCTTCCTGGA
  R
  CTAAGCGTGG GGCCAGCTGT GTAAGTAAAG TTTTGTTTTT CTTCTTAAAC AACTTTTTCC
  CTCTATTTAA AAATGTGAAG AAAAAGGCAA AAAAAACAAC AACAAAAAAA AAAACAACAA
  AAAAAAACCC ACCAAAAAAC CTAGATATTC TTTTCTTTCA TTTTTGCTCT CTTTAGTGGA
  AAGAAAAGGA ATAAAAAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593250	MGP_WTSI_3_79689128	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241791482					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593250	MGP_WTSI_3_79689128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			851 bp proximal
Gask1b	golgi associated kinase 1B			Intron
				mRNA-UTR
Gm36569	predicted gene, 36569			within coordinates
Rr375225	regulatory region 375225			1674 bp downstream
Rr375226	regulatory region 375226			269 bp upstream
Rr578602	regulatory region 578602			1725 bp distal
Rr578603	regulatory region 578603			1932 bp distal
Rr578604	regulatory region 578604			1648 bp distal
Rr578605	regulatory region 578605			within coordinates
Rr578606	regulatory region 578606			628 bp proximal
Rr578607	regulatory region 578607			1148 bp proximal
Rr578608	regulatory region 578608			1597 bp proximal
Rr578609	regulatory region 578609			1646 bp proximal
Rr578610	regulatory region 578610			1686 bp proximal
Tssr29596	transcription start site region 29596			635 bp downstream
Tssr29597	transcription start site region 29597			614 bp downstream
Tssr29598	transcription start site region 29598			116 bp downstream
Tssr29599	transcription start site region 29599			87 bp downstream
Tssr29600	transcription start site region 29600			38 bp downstream
Tssr29601	transcription start site region 29601			9 bp downstream
Tssr29602	transcription start site region 29602			743 bp upstream
Tssr29603	transcription start site region 29603			834 bp upstream
Tssr29604	transcription start site region 29604			906 bp upstream
Tssr29605	transcription start site region 29605			975 bp upstream
Tssr29606	transcription start site region 29606			1008 bp upstream
Tssr29607	transcription start site region 29607			1678 bp upstream
Tssr29608	transcription start site region 29608			1696 bp upstream
Tssr33752	transcription start site region 33752			957 bp downstream
Tssr33753	transcription start site region 33753			975 bp downstream
Tssr33754	transcription start site region 33754			1590 bp downstream