rs241775879 SNP Detail

Summary

• ID
  rs241775879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67394203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CTCTCTCTCT CTCTCTCTCT
  M
  TATATATATA TATGTGTGTA TGTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	FVB/NJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J
ss915469284	MGP_WTSI_2_67563859	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	FVB/NJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J
rs241775879					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915469284	MGP_WTSI_2_67563859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67394203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11705	CpG island 11705	1262 bp proximal
Rr558220	regulatory region 558220	1008 bp proximal
Tssr18010	transcription start site region 18010	1821 bp upstream