rs241768520 SNP Detail

Summary

• ID
  rs241768520
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152422412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGACTTT GTGGGATTGG AGAGCTGGTG
  ACCCCACAAC TTCTGTGCTC TTAAAGTTGC TGTGAGACCT TGGCTGCACC AGGCTGAACG
  CTCTCATTTA AAATTCTAGT CTTGCTCCCC AGGGCTCCAG CATCCAGCTT CACCTCTAAC
  G
  AGCAGGACTG GCTGGCAGTC GCCAACCCTT CTGCTAGGCG ACAGGTGTCC TGAGTGGCAG
  TCCAGGGCAC AGACCATACA GAGCTCCAGG GACCTGGATG TGTTTGAGCT GGACACAGAC
  CAATTTTGGA AAGAGGGCAA GTGTTGGggg                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434228	CHEV_4_151712064	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241768520					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152422412 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	696 bp upstream
Cpgi15412	CpG island 15412	272 bp proximal
Rr605852	regulatory region 605852	245 bp proximal
Rr605853	regulatory region 605853	943 bp proximal
Tssr40549	transcription start site region 40549	664 bp upstream
Tssr40550	transcription start site region 40550	762 bp upstream
Tssr40551	transcription start site region 40551	860 bp upstream
Tssr40552	transcription start site region 40552	959 bp upstream
Tssr40553	transcription start site region 40553	1019 bp upstream