rs241749204 SNP Detail

Summary

• ID
  rs241749204
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACTCT TGCTTTCCAA
  GCTGTTTCTT GCAGCACAGT GGGCCGCCTC TCTACAGAAA AAGCCATGGA CTTGATGGAG
  GTCAGCCCTC AGCTGACAGT TGGGTCTGTC TTGTCAGTTT CAAGGTTCTG GTGTCCAAAG
  TTAATCCTTT CTCACATAGA AAAAAAAATT ACAAGACCCG GATGGCACGG GGGGGGGGGG
  G
  GTTCAGTTTT ACTCACTTGC ACTCACTTGC TCAGAGGTCA TTTTTGTTTT AGAGTTTTAG
  AGTTTGCTGG AGTGTGATGG TAGCTGCCAG TATTTGATTT AAATTTACCT GGGAAATAAG
  AAAAGCCCAA AAAAGGTATA AATGATGTGA ATATCTCACT CAGAGTCTGG TAGACTTGGC
  AGAGATGTGT CCTGTGCTAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss369791544	MGP_WTSI_6_117121984	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs241749204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791544	MGP_WTSI_6_117121984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148927 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1343 bp distal
Rr637288	regulatory region 637288	465 bp proximal
Rr637289	regulatory region 637289	1900 bp proximal
Tssr58391	transcription start site region 58391	1961 bp downstream
Tssr58392	transcription start site region 58392	479 bp downstream
Tssr58393	transcription start site region 58393	460 bp downstream
Tssr58394	transcription start site region 58394	420 bp downstream
Tssr58395	transcription start site region 58395	1526 bp upstream
Tssr58396	transcription start site region 58396	1542 bp upstream
Tssr58397	transcription start site region 58397	1580 bp upstream
Tssr58398	transcription start site region 58398	1606 bp upstream
Tssr58399	transcription start site region 58399	1628 bp upstream
Tssr58400	transcription start site region 58400	1656 bp upstream
Tssr58401	transcription start site region 58401	1692 bp upstream
Tssr58402	transcription start site region 58402	1723 bp upstream
Tssr58403	transcription start site region 58403	1741 bp upstream
Tssr58404	transcription start site region 58404	1760 bp upstream
Tssr58405	transcription start site region 58405	1802 bp upstream
Tssr58406	transcription start site region 58406	1832 bp upstream
Tssr58407	transcription start site region 58407	1863 bp upstream
Tssr58408	transcription start site region 58408	1930 bp upstream
Tssr58409	transcription start site region 58409	1952 bp upstream
Tssr58410	transcription start site region 58410	1974 bp upstream
Tssr58411	transcription start site region 58411	1990 bp upstream
Tssr62617	transcription start site region 62617	1590 bp downstream
Tssr62618	transcription start site region 62618	1612 bp downstream
Tssr62619	transcription start site region 62619	1648 bp downstream
Tssr62620	transcription start site region 62620	1691 bp downstream
Tssr62621	transcription start site region 62621	1757 bp downstream