rs241698873 SNP Detail

Summary

• ID
  rs241698873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGCGT TCCCAGGACA
  GTCTGAGGTG TGTCCTATTA TGAAATGGTA GCAGTAGATT TTTTTAGTGT TTCCAGAATC
  AAGTTAAAAT CCTGCCACCC GGAAGTCATC ATATCATTTA TGCATACATG TAATGTATAT
  GTATCATCAC ATATAGTGTG TGTCCACATA TGTGCACATG TGATGGTGTA CTTGTGTAAT
  Y
  CCAGTGGTTG GAAATGTTGA CTAAGGAGAA AGACAAGTTC AGGGCTAGCC TGGGCAACTT
  AGTAAGACAC CCAACCTCAC GCATGCTAAG TGTGTCTTCC ATCATTGAGC TGCACATTCC
  TGGGGGTGCA TATTCAATAA AGACATTTTT CTTCTTTTCA GTGTGTCTGT GGCGAGTGCA
  TGTGTGTATG TACATTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357339401	MGP_WTSI_3_27089212	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241698873					SNP	T	T	T	C	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357339401	MGP_WTSI_3_27089212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1514 bp distal
Rr574360	regulatory region 574360			86 bp distal
Rr574361	regulatory region 574361			493 bp proximal
Rr574362	regulatory region 574362			1571 bp proximal
Tssr28607	transcription start site region 28607			1881 bp downstream
Tssr28608	transcription start site region 28608			1849 bp downstream
Tssr28609	transcription start site region 28609			1832 bp downstream
Tssr28610	transcription start site region 28610			1842 bp upstream
Tssr32839	transcription start site region 32839			1640 bp downstream
Tssr32840	transcription start site region 32840			1684 bp downstream