rs241653729 SNP Detail

Summary

• ID
  rs241653729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGCGGGT GGAGGCACTG
  GTTTGTCCCG CGTGGCTGCA GGAGGCGAAC GCTGGGAGTC GGGTCGAGGT CGCTGCGTGC
  CAAGGCACTT TTGGGGAAGG GTTGTCGGCA CTGAAGCTGC GGGCACTTAG CCGAAGACTG
  GGTTGGGACG CAATGCCGCA CGAGGGGCCG CTGAGGCATC TCTCGCGGGC AAGGAGGGCG
  Y
  GTGGTCTCGG CTTGGAGCCG AGGTCCCGCT TCGTGGTGCC GGTAGTGCGT CCAGCCGGGA
  AGCGTCGCGG CGACCCAGAC GGCCCGGGAG AAGTAGCCGC GCGGTAGCGG CGGGCGGGTA
  GACTTAACTC TTCGCTGACG CGGGTTCATT GCGGAGGTTT GAGTATTAAA ATCACACGCG
  CCCAGACTTT GCTTGTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355609321	MGP_WTSI_2_127952274	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241653729					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355609321	MGP_WTSI_2_127952274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			375 bp upstream
Gm75596	predicted gene, 75596			1347 bp downstream
Rr397296	regulatory region 397296			795 bp upstream
Rr564648	regulatory region 564648			1991 bp distal
Rr564651	regulatory region 564651			478 bp distal
Rr564652	regulatory region 564652			311 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1475 bp proximal
Rr564655	regulatory region 564655			1484 bp proximal
Tssr20042	transcription start site region 20042			482 bp downstream
Tssr20043	transcription start site region 20043			1020 bp upstream
Tssr20044	transcription start site region 20044			1049 bp upstream
Tssr20045	transcription start site region 20045			1573 bp upstream
Tssr20046	transcription start site region 20046			1587 bp upstream
Tssr26150	transcription start site region 26150			862 bp downstream
Tssr26151	transcription start site region 26151			1486 bp downstream