rs241616979 SNP Detail

Summary

• ID
  rs241616979
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGATGA ACACAGGAGA
  AAACAGGTTG TGTGGGAGGT GGGAGAGGAG CGTTAGTGAG GCAGGAGGAA GAGTGGAGGG
  GGAAGAGTTT TGCAAAGAGT GATGGGGGCT TCTGAGGCTC TGAAGCAGGC AGGAGCCAGG
  CTGTGCTTAG ATGTTTGAGC TGGGAGCTTT GGGAAGCCAA GAAGAGGATC AGAGGCAAAG
  C
  TGAGGCTGGA GAGATGGCTC AGCAGTTAAG AACACTGGCT GCTCTTGCAG AGGACTCAGG
  TTTGGTTTCC ATCAACTACA TAGAGGGTAA AGGCGGTCTT TAACTCCAGT TCCAGGGCAT
  TCAGTGCCAC TACACACACA GTGCCATAGT GCATGCATAT ATATATATAT TATATATGCA
  TGCATATATA TGTGTGTGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336241	CHEV_4_132314221	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241616979					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	975 bp distal
Gm70165	predicted gene, 70165	within coordinates
Rr601063	regulatory region 601063	1065 bp distal
Rr601064	regulatory region 601064	791 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	1059 bp upstream
Tssr43702	transcription start site region 43702	1199 bp upstream
Tssr43703	transcription start site region 43703	1154 bp upstream
Tssr43704	transcription start site region 43704	1119 bp upstream
Tssr43705	transcription start site region 43705	1066 bp upstream
Tssr43706	transcription start site region 43706	1047 bp upstream