rs241541643 SNP Detail

Summary

• ID
  rs241541643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16363970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCAAAT GGATCTAACA
  GATATTTATA GAACATTTCA TCCTAAAGCA AAAGAATATA ACTTATTCTC GGCACCTCAT
  GGTTCCTTCT TTAAAACTGA CCATATAATT GGTCACAAAA TAGGTCTCAA CAGATACAAG
  AAGATTCATA AAATCCCATG CACCCTATTA GATCACCATG GAGTAAGGCT GGTCTTAAAT
  W
  CCAACAAAAA CAATGGAAAA CACACACCCA TGGAAGCTTA ACAATTCTCT CCTCAATGAT
  AACTTGGGCA AGGAAGAGAA AAAGAGATAT CAAAGGCTTT TTAGAATTTA ACAAAAATGA
  GCCCACAATA TACCCAAACT TATGGGACAC AATGAAAGCA GTGGTAAGAG GAAAACTCAT
  AGCTCTAAGT GCCTCCAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320671130	CHEV_3_16209806	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241541643					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16363970 () rs orientation: forward

Symbol	Name	Function Class
Rr573795	regulatory region 573795	1151 bp proximal
Rr573796	regulatory region 573796	1227 bp proximal