rs241523165 SNP Detail

Summary

• ID
  rs241523165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100522609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGAGT GTGATGGTTG
  AAATCCCCTG TGGGAAACTA ACCCCTCCCC GATCACAGAG GTAGAACGCA ACACCCACTG
  CCCAACCCTC TTCTAGCCAG CCTGGCCAGC GGCAGGGGGT GGGTCCGTGG AGCCGCCACC
  CCGCCCCACC GGCCCCACCC CTGCCCCCGC CCCTGGCCCT GGGCCTTCTC CGCTCCACCC
  Y
  GTCACCTGCA CCACCTCTCT GCGGCACCCT AAATAACCAG TACATGGCCC CTGCCGCTCC
  AATAGCCGCA GCCTGGGGGG AATTCTAGGG GTCTCGGAGA GAGTAACCTC CGGATGACAA
  CTCTCATTGG AGAGACTCTT GTTGAGCTGG CACCAAGTCC CCCTCTTTTG TGTCACCACG
  CGCCTAGGCA GCCTTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392224840	MGP_WTSI_14_100684392	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241523165					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392224840	MGP_WTSI_14_100684392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100522609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41231	predicted gene, 41231			301 bp upstream
Klf12	Kruppel-like transcription factor 12			Intron
				mRNA-UTR
Rr496738	regulatory region 496738			505 bp distal
Rr496739	regulatory region 496739			within coordinates
Rr496740	regulatory region 496740			1394 bp proximal
Tssr126898	transcription start site region 126898			4 bp upstream
Tssr130012	transcription start site region 130012			951 bp upstream
Tssr130013	transcription start site region 130013			675 bp upstream
Tssr130014	transcription start site region 130014			484 bp upstream
Tssr130015	transcription start site region 130015			445 bp upstream
Tssr130016	transcription start site region 130016			324 bp upstream
Tssr130017	transcription start site region 130017			294 bp upstream
Tssr130018	transcription start site region 130018			231 bp upstream
Tssr130019	transcription start site region 130019			181 bp upstream