rs241500651 SNP Detail

Summary

• ID
  rs241500651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8732363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCGTGCC CCGGCCAATT
  GGCGCCTCGC TGCGCAGATT GGCAGCCGCA TGGGGGCGGG ACGAGCGGAG GCCGAGGCTG
  GCTGCTCCCC GCCCCCGGAG CCCGCCCCTG CCCGGCGGCA GTGCGTCGGC TCCGCAGGAG
  TTCGGCTGGG GGCCGCGGGC GGCGGTGGGC CGGCGGCGGG CAGAAATGGG GGGCCGGCCC
  R
  GGACACCAGC CCGGCGATAG CCACCGCCCC GCCCAGCCCC ACCCCGCGCG CCCGGATTGG
  CCTGGCCGTG TGCCAGGGCC GCGCCTGCAG CGCCGCCGGT GAGCCGCACG CGCCGCGGGC
  CGTGGGAAAG TGCCGGCGCC CCGGCCGCCA GCCAATCCGG ACGGACGGCG ACGGCGGCGG
  CGACGGTGGC GGCGGCGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356905130	MGP_WTSI_3_8667303	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241500651					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905130	MGP_WTSI_3_8667303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8732363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	265 bp upstream
Rr573306	regulatory region 573306	762 bp distal
Rr573307	regulatory region 573307	138 bp distal
Rr573308	regulatory region 573308	within coordinates
Tssr32550	transcription start site region 32550	1504 bp upstream
Tssr32551	transcription start site region 32551	460 bp upstream
Tssr32552	transcription start site region 32552	325 bp upstream
Tssr32553	transcription start site region 32553	291 bp upstream
Tssr32554	transcription start site region 32554	257 bp upstream
Tssr32555	transcription start site region 32555	247 bp upstream
Tssr32556	transcription start site region 32556	7 bp upstream