rs241482963 SNP Detail

Summary

• ID
  rs241482963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGATT TATTCGCCAG
  ACTTGATAAA GGAGCCTAAA TGGAATTCAG ACACCCTGCT TGATTTTTTT CCTGGCTCAT
  CTAGTCACCT TTCACATTCT TTGTTACAAC CAAATAACAC TGCTCCTCCG AGTTGTCCTG
  TGTCCTTCCA CACTAGCCTT TCAGCATTCT GAAGGCAGAG ACTGGTTCTA TCACATGGCC
  Y
  ATTCAGTAGA CATGTGCTAA ACATAATATT AGACAAAATA CTAAATTTGG TCTAGGCACA
  GAGGTAGGTG GCTCGCGTGT CATACATAAA GCTCTGGATT TCTCAACACT GAAAATAAAG
  AACCTACCTG AAAAATGGGG AACTAAAAAT TCAAGAGAAT TTAGAAGCCC TGGAGAGCTG
  ACTCAGTGGT TAAGAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911130	CHEV_6_113572198	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241482963					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1467 bp proximal
Rr636555	regulatory region 636555	1377 bp proximal
Tssr58233	transcription start site region 58233	1784 bp upstream
Tssr58234	transcription start site region 58234	1844 bp upstream
Tssr58235	transcription start site region 58235	1922 bp upstream
Tssr62461	transcription start site region 62461	1324 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1790 bp upstream