rs241454893 SNP Detail

Summary

• ID
  rs241454893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76354395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCAAGTC ACATATCAAC CCCCAGACTT
  CTTTCAGAAA TGTCTAACAG GTTGTTCTGA TATGTGCTTG TCAGCATTAA TTACATGTGA
  CACTGGATTG GCTTGATCGC TGACAAAATT TAAAAGCACT ATAATAAAGC AAAAGGGCAT
  S
  AGGAAAGCTG CCAAGCCGAA GGCTCAGAGG GTTCACACAC CTCCCTCTGG CCCAGCTCCT
  CCACCCCCTG ATACAGCTGC TCCTCTCTGC AGGTGGGATT TAGGATAGCA AACCTATCCA
  CTTTGTATAG GCCAGCCCAA CTCGCTGTCC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170931	CHEV_4_76082062	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241454893					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76354395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			within coordinates
Tssr42160	transcription start site region 42160			362 bp upstream
Tssr42161	transcription start site region 42161			280 bp upstream