rs241410061 SNP Detail

Summary

• ID
  rs241410061
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89067672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCGAGGG CTGCGTGAGA CTgggcgggg
  cggggcgggg cgggCCGCTG GCACAACTGC TGCCCACACT TTCCCGAGAG GGCGTGGCTT
  AGGGGTCCTG AGGGTGGGTG GGTGCtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  S
  tgtctgtctg tctgtctgtc tgtctgtctg tctgtgtctg tgtgtgtgtc tgtgtgtctg
  tgtgGTGGGA GTGCTCAGCT TGCTTCTGGA GGCGGGAAAC TCACTAGGGC ATATGCAGCC
  TGGGGACCTC CTGAGGGTCA GGGACAGAAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320836700	CHEV_3_88964287	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241410061					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89067672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13404	CpG island 13404	within coordinates
Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	134 bp upstream
Rr579960	regulatory region 579960	within coordinates
Rr579961	regulatory region 579961	139 bp distal
Tssr34093	transcription start site region 34093	163 bp upstream