rs241406421 SNP Detail

Summary

• ID
  rs241406421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTGGCT TCACCGCCCG
  CCACTGGCAT TTCAGGGCCA CGGACCACAC AAATGGTGGC AGGTGAGTTC TGGATGAAGT
  ACGACCAGCT CTGACATTCA GCAAGCATCA AGCCTGCAAT CCATGAAATG GGTTCAGACA
  TGACCCCTTT CTCAAACAGG AAGGGCAAGG TAGAAAGTGG GGCCCTGTGG CTCTGTCCTG
  Y
  GGCTCTGTCC TGTGGCTCTG TCCTGCGGTT CTGACCCTGT GGCTCTGTCC TGCGGTTCTG
  TCCTGCGGTT CTGTCCTGCG GTTCTGTCCT GTGGCTCTGT CCTGTGATTC TGTCCTGCGG
  TTCTGTCCTG CGGCTCTGTC CTGCGGCTCT GTCCTGCGGT TCTGTCCTGC GGTTCTGTCC
  TGCGGTTCTG TCCTGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss379371144	MGP_WTSI_10_8483574	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241406421					SNP	C	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379371144	MGP_WTSI_10_8483574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639540 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	757 bp downstream
Rr427376	regulatory region 427376	445 bp distal
Rr427377	regulatory region 427377	251 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1380 bp upstream
Tssr96640	transcription start site region 96640	1517 bp upstream
Tssr96641	transcription start site region 96641	1493 bp upstream
Tssr96642	transcription start site region 96642	1462 bp upstream
Tssr96643	transcription start site region 96643	1406 bp upstream
Tssr96644	transcription start site region 96644	1310 bp upstream
Tssr96645	transcription start site region 96645	1160 bp upstream