rs241340389 SNP Detail

Summary

• ID
  rs241340389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116688505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCAAGG AGACGGAGTA
  AACAGATCAT GGAGGAACCT GTCCACGCAT GCCCATTACT GAACTACTCA CAGAAAGCCA
  AGATAAGAGA TCAGCCTATG TGTCCATCCA TAGATGAACA GACAAAGAAG GTTTGGTACA
  TATCCACGAT GGGCTTTTAT TCAACTTTAA GGAAGAATTG TGTCTTTTTT TTTTTTTTTT
  K
  TGGAGACTAT AATGTTAAGT TAAATAAGCC AGGCTTAAAG AGAAAAATAT GTTGTCTTGA
  ATGTGGAAAA CACACACACA CACACACACA CACACACACA AGAGAGCAAG AAAGATTAAT
  AGGCAGATGG ATATGGACAA TATATGCATA TATATTGTAC ATACACAATA TATATTGTAC
  ATATACATAT ATGTGTGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss369779613	MGP_WTSI_6_116661562	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	T	G	G	G	G	T	T	T	G	T	T	T	G	G	G	T	T	G	G	T	G	T	G	T	G	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs241340389					SNP	T	T	T	G	G	G	T	G	G	G	G	T	T	T	G	T	T	T	G	G	G	T	T	G	G	T	G	T	G	T	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369779613	MGP_WTSI_6_116661562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116688505 () rs orientation: forward

Symbol	Name	Function Class
Rr637245	regulatory region 637245	741 bp proximal
Rr637246	regulatory region 637246	1018 bp proximal
Tmem72	transmembrane protein 72	Intron