rs241328894 SNP Detail

Summary

• ID
  rs241328894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAAATCAG AAAGTGCCAG TGAATGGTTT
  GGTGGTCATG AAAGCCTGCA GAGCCCGATG AAGGGAGTTG GAATTCTTTT CACCCTCTGA
  GAGTGAATCA TGAAGTGGCA GGCTCTGTGg gaacgaagga aggaaggaag gaaggaaggT
  K
  GATCCCGAGA TTTATAGCCC TGAGTCATTA GGGGTAAACA GCTGATAAGA GAGCCACAGC
  AAACTGCTTA TCAACCCCTC ATTCTGTTTT ATGTAGCCTT GGGGCAAAAT ACAAACCCCA
  TAAGAGCCAC TAAGTAAAAA ACAAAGGACT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946684	CHEV_3_126314824	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241328894					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1591 bp upstream
Rr584654	regulatory region 584654			687 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			792 bp proximal
Tssr35522	transcription start site region 35522			14 bp upstream