rs241316372 SNP Detail

Summary

• ID
  rs241316372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63778639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC CCTCTCCCTC
  TCTCTCTCCC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCAAAT ATCACAGTCT
  TTAAAAAGTA GCTCCTCACT AAAAACAAGC AAGCAAGCAA GAAAACAACC ACAACAAACA
  AACAAACAAT AGCAACAACA GACTCTCGGC AAAAGAGAGG CCTCAGAAGT CCTGGGAGCA
  S
  GGATTGAGGA CATAACCTTA GAATTAGGAT GAGCGCCTTA CAGAGGTGAT ACCCACATGC
  GCACTCGCCA TCAGGGCTCC CTATGCTTCC TCCCTCCATA CTGTGAGGCT GTGACCCATC
  TGGGCTTCAA TCTTAACTTC TCAAGGTCAG CAGCTCTTCT GTTGGCTCCA GTACATCTGG
  AAATTTTTGA GCTCATGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361746659	MGP_WTSI_4_63521436	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241316372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361746659	MGP_WTSI_4_63521436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63778639 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	234 bp distal
Rr593619	regulatory region 593619	within coordinates
Rr593620	regulatory region 593620	935 bp proximal
Rr593621	regulatory region 593621	1769 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron
Tssr42075	transcription start site region 42075	490 bp downstream
Tssr42076	transcription start site region 42076	521 bp downstream
Tssr42077	transcription start site region 42077	627 bp downstream
Tssr42078	transcription start site region 42078	698 bp downstream
Tssr42079	transcription start site region 42079	876 bp downstream
Tssr42080	transcription start site region 42080	894 bp downstream
Tssr42081	transcription start site region 42081	924 bp downstream