rs241280758 SNP Detail

Summary

• ID
  rs241280758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109333233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCCACA AGCTAAACTA
  CTAGGCACCG AAGGGGATAA GATCACACAC TCGATTCCTG AACTCAAGGA CAGAAGACCG
  TCCTCAACCC GTGCCCAAGG GGATGCCCAG AAGGACCCTT TTCCATTTGG GAACCGGGCA
  GCAGACACCC TCAAGGCCAG CCCTGAAGGG GTCAACGCCA CCCCCCCCCC ACCCACCCCC
  R
  GTCTAGGCCG TGGAGGCCAA GGGCAGAGGG CCCGAGCCGC CTCCTCTCGC ACGCCGACAC
  ACACCCTCCC TACCTGATAT GGCGGCGGCG GCTCCTGATC TGGCTCCGTC CCCTCGCCAA
  AGCTAGCCCG GTCGGACTGA GACTCGTGAA GCAGGGAGAT GTCATCCGAA GTCGGGGATT
  TGAGGCAGTT CCCCATCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362802672	MGP_WTSI_4_109148641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241280758					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802672	MGP_WTSI_4_109148641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109333233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	within coordinates
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	629 bp proximal
Rr597333	regulatory region 597333	793 bp proximal
Tssr38352	transcription start site region 38352	186 bp downstream
Tssr38353	transcription start site region 38353	135 bp downstream
Tssr42763	transcription start site region 42763	229 bp downstream
Tssr42764	transcription start site region 42764	392 bp downstream
Tssr42765	transcription start site region 42765	417 bp downstream
Tssr42766	transcription start site region 42766	446 bp downstream
Tssr42767	transcription start site region 42767	561 bp downstream
Tssr42768	transcription start site region 42768	572 bp downstream
Tssr42769	transcription start site region 42769	630 bp downstream