rs241258076 SNP Detail

Summary

• ID
  rs241258076
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGG ACCCTGGCTC CGGCCACGGC
  K
  CAACCTACAA AGAGCTTGCC GGCGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354366	CHEV_4_135728734	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241258076					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15100	CpG island 15100			within coordinates
E2f2	E2F transcription factor 2			Coding-Synonymous
				mRNA-UTR
Rr367754	regulatory region 367754			365 bp downstream
Rr398609	regulatory region 398609			1768 bp upstream
Rr602302	regulatory region 602302			415 bp distal
Tssr39670	transcription start site region 39670			531 bp downstream
Tssr39671	transcription start site region 39671			424 bp downstream
Tssr39672	transcription start site region 39672			392 bp downstream
Tssr39673	transcription start site region 39673			377 bp downstream
Tssr39674	transcription start site region 39674			240 bp downstream
Tssr39675	transcription start site region 39675			66 bp downstream
Tssr39676	transcription start site region 39676			31 bp upstream
Tssr39677	transcription start site region 39677			126 bp upstream
Tssr39678	transcription start site region 39678			348 bp upstream
Tssr44029	transcription start site region 44029			496 bp upstream
Tssr44030	transcription start site region 44030			215 bp upstream
Tssr44031	transcription start site region 44031			219 bp downstream