rs241216312 SNP Detail

Summary

• ID
  rs241216312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52813016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTCCATC AACTCTCTGT
  GACAGAGTTG TGGATGTTTA TTGTGAAAGC TTTTCCTTTG GTTTGGGAAC CTTCACAATA
  AAGTGATTAG GAATAGAAGG GTGGCTGAGA GTGATTAAAT GACCATCCTG ATATTACGCT
  CTGAAGCTGG GCTGAGACCC AAATCCAAGT CCAAATCTGA TCCAAGTTCC CATGCCTAAG
  Y
  GGGCCATTTA AGAAGAATCA TTATTGTTCC GTGTTTAAAC AAAGGCGCTA GTACCAGAAA
  GCCCTAAATC CTGGCTAACC AGCTCTGCAC ACTGGCTCTT CCATAAAAGG GATGCTGCTT
  CAGAGGAGAA CGCATTTCCA TCTCTCAGAT TCCTCTCTGG GAGTATCACC CCCTTCATCT
  TGGTCCCTTC GGGGTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765860	CHEV_3_52709517	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241216312					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52813016 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	1161 bp downstream
Rr576600	regulatory region 576600	1670 bp proximal
Rr576601	regulatory region 576601	1759 bp proximal