rs241098270 SNP Detail

Summary

• ID
  rs241098270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137749866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCCTTTA ATCCCAGCAG
  AGGGAGGCAG AGGCAGTTGG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC AGAGTGAGTT
  CCAGGACAGC CAGGGCTACA CAGAGAAACC CTGTCTCTAA AATCCCCCCC CCCCCCAAGA
  AAGTAATATT CTTGAAATCT AATTTTCTAT TGTTTAAAAG ACGTTAGCTA GATAGGTAGA
  Y
  ATTAGAATGA ATAATAGTCC CCTTCTCTGT GTTTGCAGTG CTTGAGGGCA AACCCCAGGA
  CTTTCCACTT GCTGGGCAAG CCTCTGCCAT TGAATAAGCT CCCCTAGCAA TAAGGTGTCA
  CTGGTAGTTC GGGCTAACCT CTAACTTGCT GTTTTTCTGT GTCTGGCTTC TGAGTCTGGG
  CTGGGCTACA CTTTTATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
ss363430073	MGP_WTSI_4_137578470	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
rs241098270					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363430073	MGP_WTSI_4_137578470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137749866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602820	regulatory region 602820			869 bp distal