rs241071528 SNP Detail

Summary

• ID
  rs241071528
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84219344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTATCCCC TTTCCTGGTT TCCCCTCCGA AAGCCCCAAA
  CCCGTACCCC CTACCCCCTA CCCCTGCTCA CCAAACCACC CACTCCTGCT TCCTGGCCCT
  S
  GCACTCCCCT ATACTGGGGC ATAGAACCTT CCAGGACCAA GGACCTCTCC TCCCATTGAT
  GACATTGATG GCCATCCTCT GCTACATATG CAGCAGCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320371282	CHEV_2_84229157	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241071528					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84219344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			1424 bp distal
Rr560246	regulatory region 560246			1088 bp distal
Rr560247	regulatory region 560247			608 bp distal
Tssr24971	transcription start site region 24971			1808 bp upstream
Tssr24972	transcription start site region 24972			698 bp downstream
Tssr24973	transcription start site region 24973			755 bp downstream
Tssr24974	transcription start site region 24974			796 bp downstream
Tssr24975	transcription start site region 24975			1796 bp downstream