rs240988750 SNP Detail

Summary

• ID
  rs240988750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83751511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTGCTA TCCCAACCAC
  ACCCACAGAC TGAGCCAATG AGCTGGCTGT AGCCCTGTCT TTACCACAAA CTACAACCCC
  AGGCTACGTT GAGAGTGAAA GTAGCTGCAG ACTTTAGGCG ACTGAAAGGT GAACTTTTCT
  GTCCAAAGGT ATCCTCCCCC CCCCCCCCCC CCGCACCTCA GTCTTCCTCA CAGCCTCTCT
  R
  ACAGGGACAG GGACCAAGTC TTCAGGAAAA GAAACCTCCA TGAGGGAAGA GAAAGGGCTG
  GACATTCTCC CTTAGGACAA ATGACACTGA GTGGAGAGAG GGCAATAGCT AACTAAGCGT
  TACAAACTGT CCTTATTGTC CCTATAAGTT CTAAGCCTGG GCTGGGATTG GGGACCTGGT
  GTTAGAGACC GTGGACACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039051	MGP_WTSI_6_83724523	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240988750					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039051	MGP_WTSI_6_83724523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83751511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	536 bp proximal
Gm52907	predicted gene, 52907	1356 bp upstream
Rr632937	regulatory region 632937	83 bp distal
Rr632938	regulatory region 632938	1140 bp proximal
Rr632939	regulatory region 632939	1274 bp proximal
Rr632940	regulatory region 632940	1367 bp proximal
Rr632941	regulatory region 632941	1672 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1399 bp upstream
Tssr57375	transcription start site region 57375	1109 bp upstream
Tssr61705	transcription start site region 61705	1031 bp downstream
Tssr61706	transcription start site region 61706	1046 bp downstream
Tssr61707	transcription start site region 61707	1053 bp downstream
Tssr61708	transcription start site region 61708	1081 bp downstream
Tssr61709	transcription start site region 61709	1140 bp downstream
Tssr61710	transcription start site region 61710	1217 bp downstream
Tssr61711	transcription start site region 61711	1238 bp downstream