rs240940616 SNP Detail

Summary

• ID
  rs240940616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131870409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGAGTG TGCCAAGTGG
  CCAGGCAGAC TATTTATTCA TAGCCCCCTT TGGTACTAAG GCAAGAAACA TGCTTCTTTG
  CAAACAAAGG TCATCTCTCA CTCCGCCATC ATTTGATGCT CCTCTCTACC TTCCTGAATC
  CCGCTGGACT GCAGCAGGTC CTAGGAATCA GGCTTTAGTC CGGAGGAGGA ACAGCCCATA
  M
  GCAACAGCTC AAATGAGCAT CGCTCAGGAA AATACCACAG TTAGTCCCCT AGGACAGAAA
  GGGAGAATGA GAACAAGGGG AGGAAGGGGG GCACTCTTCT CAAATCCAGT ATAGCTTAGC
  CACAGAGGTT TCTTTAACCC CCAGACCACC TGTAGGAAAA GCTTCCACTT AATAAACGTG
  GATTGAAAGT ATGGCAAATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355696511	MGP_WTSI_2_131854225	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240940616					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355696511	MGP_WTSI_2_131854225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131870409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	574 bp proximal
Gm31179	predicted gene, 31179	1962 bp upstream
Gm75461	predicted gene, 75461	1497 bp upstream
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	Intron
Rr367316	regulatory region 367316	800 bp upstream
Rr397324	regulatory region 397324	1416 bp upstream
Rr565378	regulatory region 565378	739 bp distal
Rr565379	regulatory region 565379	within coordinates
Rr565380	regulatory region 565380	1007 bp proximal
Rr565381	regulatory region 565381	1555 bp proximal
Tssr20292	transcription start site region 20292	805 bp downstream
Tssr20293	transcription start site region 20293	135 bp downstream
Tssr20294	transcription start site region 20294	1491 bp upstream
Tssr26436	transcription start site region 26436	672 bp downstream
Tssr26437	transcription start site region 26437	699 bp downstream
Tssr26438	transcription start site region 26438	1299 bp downstream
Tssr26439	transcription start site region 26439	1319 bp downstream
Tssr26440	transcription start site region 26440	1326 bp downstream
Tssr26441	transcription start site region 26441	1335 bp downstream
Tssr26442	transcription start site region 26442	1356 bp downstream