rs240902425 SNP Detail

Summary

• ID
  rs240902425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34723581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGGAT TTCAATATTG
  GTCCCAACTA CACTTAAAGA TATAAGTTTT AACAAACCTT GCAGACATGG CTCTGAGCTT
  CCCAAGCTAT TCAACTGAAG GGTTTGAATC TAATAGATTC TCTAAAACTC ATTTCAATTC
  TAAGATCCTG TAAGTAATAC GTGATTGTGT CCAGTCTCTC AGTATCCAAA GCTCACACTT
  Y
  CTACAGTCAT AAGCCAGGCA TCACGGGTGG CTAGCACACC ATTAGCTGTA GTTTAGTGTG
  ACTTGGGGGT GGGGGTGGGG GTGGGGGGGA GAAATTACAC AGCCAGCAGC TGCAGATTTC
  AACAGCTAGT GAGCTCAAAT ACCCGTAGCC ACAGGGTCTT CCTGAACTTG GCAAGCCCGA
  AGATTTTTTT CCTTCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402329700	MGP_WTSI_19_34820671	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240902425					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329700	MGP_WTSI_19_34820671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34723581 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	657 bp downstream
Rr546785	regulatory region 546785	within coordinates
Rr546786	regulatory region 546786	1098 bp proximal
Rr546787	regulatory region 546787	1891 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	Intron
Tssr156164	transcription start site region 156164	119 bp upstream
Tssr159005	transcription start site region 159005	919 bp downstream
Tssr159006	transcription start site region 159006	952 bp downstream
Tssr159007	transcription start site region 159007	1013 bp downstream
Tssr159008	transcription start site region 159008	1042 bp downstream
Tssr159009	transcription start site region 159009	1110 bp downstream
Tssr159010	transcription start site region 159010	1140 bp downstream
Tssr159011	transcription start site region 159011	1253 bp downstream
Tssr159012	transcription start site region 159012	1272 bp downstream
Tssr159013	transcription start site region 159013	1302 bp downstream