rs240804480 SNP Detail

Summary

• ID
  rs240804480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106453767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAAACA GCACTGCATG
  GCCCTCAAAA TGAGCACCAC CAGCATTTCT AGCCAGTTTA AAGAGCAAAA TATAGCTGGG
  TGGTGGTGCA CACCTGTGAT TCCAGCACTA AGAAGGTAGA GAGAAGCAGG GGGATCCCTG
  AGTTGGTGCG GATCTGGTCT ACACAGCAAG TACCAGAACA GCCAAGGATA CATAGTGAAA
  M
  TTTGTCTAGA AAAAAAACCC AACCAACCAT AAAAAAAAGA AGAAAAGAAG AAAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAAGCAA AATGTAGTTT
  AGAAAAGAAA GTGCTATGCA ATAAAATGTA ATTGGTAATG TGAGAGTCAG ATTTACCTAC
  TTCGTTTCTT AAAAGGAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359130120	MGP_WTSI_3_106349369	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240804480					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359130120	MGP_WTSI_3_106349369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106453767 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			706 bp proximal
Dram2	DNA-damage regulated autophagy modulator 2			1347 bp upstream
Rr375539	regulatory region 375539			781 bp upstream
Rr582853	regulatory region 582853			1212 bp distal
Rr582854	regulatory region 582854			480 bp distal
Rr582855	regulatory region 582855			407 bp proximal
Rr582856	regulatory region 582856			1121 bp proximal
Rr582857	regulatory region 582857			1432 bp proximal
Tssr31114	transcription start site region 31114			552 bp downstream
Tssr31115	transcription start site region 31115			1246 bp upstream
Tssr31116	transcription start site region 31116			1276 bp upstream
Tssr31117	transcription start site region 31117			1371 bp upstream
Tssr34980	transcription start site region 34980			279 bp upstream
Tssr34981	transcription start site region 34981			1113 bp downstream
Tssr34982	transcription start site region 34982			1131 bp downstream
Tssr34983	transcription start site region 34983			1251 bp downstream
Tssr34984	transcription start site region 34984			1275 bp downstream