rs240781430 SNP Detail

Summary

• ID
  rs240781430
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58204633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGGGA GTACCCTCAT
  AGAGGTAGTA GGAGGGGGGA TGGGAGAGGG GTCTGAAGGG GAGACCTGGA AAGGGGAAAA
  CATTCGAAAT GTAAATAAAG AAAATATCCA ATAAAAAATA TCATGTATTC AGATGCACAT
  AACAGGAGAA TGTAAATTTA TACAACTCTC CAATGGAGGA GGTGGCAATG TGGACCAAGA
  M
  CTTTCAAATG TTCATGTATT TTACTAAATA AGGAATTTAG AAAGCCCTCC TAAAGAAGCA
  GTCAAAGAGG GCTTCCTAAA CTCCTTATTT AAAAGGCACG AATGTGTGCT CCCCACACAG
  CAGTTCTCAG CACTCAGTTG TCATGAGGCT GGAGATAGGG CTCAGTGGTT AAGAGCACTG
  ACTTTCTCAG GTATGGCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321137329	CHEV_4_58217505	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240781430					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58204633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			1065 bp proximal
Rr592872	regulatory region 592872			1953 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1690 bp downstream
Tssr41871	transcription start site region 41871			1715 bp downstream
Tssr41872	transcription start site region 41872			1871 bp downstream
Tssr41873	transcription start site region 41873			1900 bp downstream
Tssr41874	transcription start site region 41874			1925 bp downstream
Tssr41875	transcription start site region 41875			1945 bp downstream
Tssr41876	transcription start site region 41876			1966 bp downstream